You should not symlink tables on systems that do not have a
fully operational realpath() call. (Linux
and Solaris support realpath()). You can
check whether your system supports symbolic links by issuing a
SHOW VARIABLES LIKE 'have_symlink'
statement.
Symlinks are fully supported only for
MyISAM tables. For files used by tables for
other storage engines, you may get strange problems if you try
to use symbolic links.
The handling of symbolic links for MyISAM
tables works as follows:
In the data directory, you always have the table format
(.frm) file, the data
(.MYD) file, and the index
(.MYI) file. The data file and index
file can be moved elsewhere and replaced in the data
directory by symlinks. The format file cannot.
You can symlink the data file and the index file independently to different directories.
You can instruct a running MySQL server to perform the
symlinking by using the DATA DIRECTORY
and INDEX DIRECTORY options to
CREATE TABLE. See
Section 12.1.17, “CREATE TABLE Syntax”. Alternatively, symlinking
can be accomplished manually from the command line using
ln -s if mysqld is
not running.
Beginning with MySQL 5.1.24, the path used with either
or both of the DATA DIRECTORY and
INDEX DIRECTORY options may not
include the MySQL data directory.
(Bug#32167)
myisamchk does not replace a symlink
with the data file or index file. It works directly on the
file to which the symlink points. Any temporary files are
created in the directory where the data file or index file
is located. The same is true for the
ALTER TABLE,
OPTIMIZE TABLE, and
REPAIR TABLE statements.
When you drop a table that is using symlinks,
both the symlink and the file to which the
symlink points are dropped. This is an
extremely good reason why you should
not run mysqld
as the system root or allow system
users to have write access to MySQL database
directories.
If you rename a table with ALTER TABLE ...
RENAME or RENAME
TABLE and you do not move the table to another
database, the symlinks in the database directory are
renamed to the new names and the data file and index file
are renamed accordingly.
If you use ALTER TABLE ... RENAME or
RENAME TABLE to move a
table to another database, the table is moved to the other
database directory. If the table name changed, the
symlinks in the new database directory are renamed to the
new names and the data file and index file are renamed
accordingly.
If you are not using symlinks, you should use the
--skip-symbolic-links
option to mysqld to ensure that no one
can use mysqld to drop or rename a file
outside of the data directory.
Table symlink operations that are not yet supported:
ALTER TABLE ignores the
DATA DIRECTORY and INDEX
DIRECTORY table options.
BACKUP TABLE and
RESTORE TABLE do not
respect symbolic links.
The .frm file must
never be a symbolic link (as
indicated previously, only the data and index files can be
symbolic links). Attempting to do this (for example, to
make synonyms) produces incorrect results. Suppose that
you have a database db1 under the MySQL
data directory, a table tbl1 in this
database, and in the db1 directory you
make a symlink tbl2 that points to
tbl1:
shell>cdshell>/path/to/datadir/db1ln -s tbl1.frm tbl2.frmshell>ln -s tbl1.MYD tbl2.MYDshell>ln -s tbl1.MYI tbl2.MYI
Problems result if one thread reads
db1.tbl1 and another thread updates
db1.tbl2:
The query cache is “fooled” (it has no
way of knowing that tbl1 has not
been updated, so it returns outdated results).
ALTER statements on
tbl2 fail.

User Comments
Instead of creating a symlink for the datafiles themselves, we've made the /var/lib/mysql directory itself a symlink to a different mysql directory.
We're using innodb tables as well as myisam tables and haven't run into any of the problems mentioned in this documentation.
This may not work for everyone, but it works great for our situation.
A quick note for those of you do do symlink tables. I symlink, for example, vBulletin tables, and I haven't had issue with the REPAIR TABLE command. However, there is a note you should be made aware of:
Say that you have the table "posts" and you make a symbolic link to it named "prefix_posts". If "posts" gets an error or corruption, then obviously that error and corruption will be present in the "prefix_posts" table too.
Running a REPAIR TABLE "posts" will fix the table "posts"; however, MySQL would have marked the "prefix_posts" table as corrupt and thus the REPAIR TABLE would not be recognized within "prefix_posts". So be sure to restart MySQL so that the symlinked table can be updated and no longer marked as crashed.
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