5917a
usr/share/ensembl/utils/dump_ensembl_valid_species.pl   non-free/science/ensembl
.
5866c
usr/share/ensembl/public-plugins/orm/htdocs/components/50_DbFrontendRow.js non-free/science/ensembl
usr/share/ensembl/public-plugins/orm/htdocs/components/50_dbfrontend.css non-free/science/ensembl
.
5775a
usr/share/ensembl/public-plugins/lucene/conf/ini-files/DEFAULTS.ini non-free/science/ensembl
usr/share/ensembl/public-plugins/lucene/htdocs/components/71_search.css non-free/science/ensembl
usr/share/ensembl/public-plugins/lucene/modules/EnsEMBL/Lucene/Component/Search/Details.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/lucene/modules/EnsEMBL/Lucene/Component/Search/Results.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/lucene/modules/EnsEMBL/Web/Configuration/Search.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/lucene/modules/EnsEMBL/Web/Factory/Search.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/lucene/modules/EnsEMBL/Web/Object/Search.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/lucene/modules/Lucene/WebServiceWrapper.pm non-free/science/ensembl
.
5773a
usr/share/ensembl/public-plugins/ensembl/modules/EnsEMBL/Web/Component/Gene/ComparaOrthologs.pm non-free/science/ensembl
.
5487d
5479a
usr/share/ensembl/public-plugins/ensembl/htdocs/info/docs/variation/vep/index.html non-free/science/ensembl
usr/share/ensembl/public-plugins/ensembl/htdocs/info/docs/variation/vep/vep_faq.html non-free/science/ensembl
usr/share/ensembl/public-plugins/ensembl/htdocs/info/docs/variation/vep/vep_script.html non-free/science/ensembl
.
5477a
usr/share/ensembl/public-plugins/ensembl/htdocs/info/docs/variation/sources_documentation.html non-free/science/ensembl
.
5472c
usr/share/ensembl/public-plugins/ensembl/htdocs/info/docs/genebuild/rnaseq_annotation.html non-free/science/ensembl
.
5463a
usr/share/ensembl/public-plugins/ensembl/htdocs/info/docs/genebuild/2011_05_microbat_genebuild.pdf non-free/science/ensembl
.
5450a
usr/share/ensembl/public-plugins/ensembl/htdocs/info/docs/compara/mlss/pie_ref_cod_align_520.png non-free/science/ensembl
usr/share/ensembl/public-plugins/ensembl/htdocs/info/docs/compara/mlss/pie_ref_cod_align_521.png non-free/science/ensembl
.
5361a
usr/share/ensembl/public-plugins/ensembl/htdocs/info/docs/compara/mlss/pie_ref_align_520.png non-free/science/ensembl
usr/share/ensembl/public-plugins/ensembl/htdocs/info/docs/compara/mlss/pie_ref_align_521.png non-free/science/ensembl
.
5272a
usr/share/ensembl/public-plugins/ensembl/htdocs/info/docs/compara/mlss/pie_non_ref_cod_align_520.png non-free/science/ensembl
usr/share/ensembl/public-plugins/ensembl/htdocs/info/docs/compara/mlss/pie_non_ref_cod_align_521.png non-free/science/ensembl
.
5183a
usr/share/ensembl/public-plugins/ensembl/htdocs/info/docs/compara/mlss/pie_non_ref_align_520.png non-free/science/ensembl
usr/share/ensembl/public-plugins/ensembl/htdocs/info/docs/compara/mlss/pie_non_ref_align_521.png non-free/science/ensembl
.
5094a
usr/share/ensembl/public-plugins/ensembl/htdocs/info/docs/compara/mlss/mlss_520.html non-free/science/ensembl
usr/share/ensembl/public-plugins/ensembl/htdocs/info/docs/compara/mlss/mlss_521.html non-free/science/ensembl
.
4956a
usr/share/ensembl/public-plugins/ensembl/htdocs/img/vep_cache_build.png non-free/science/ensembl
usr/share/ensembl/public-plugins/ensembl/htdocs/img/vep_cache_build_thumb.png non-free/science/ensembl
usr/share/ensembl/public-plugins/ensembl/htdocs/img/vep_cache_cache.png non-free/science/ensembl
usr/share/ensembl/public-plugins/ensembl/htdocs/img/vep_cache_cache_thumb.png non-free/science/ensembl
usr/share/ensembl/public-plugins/ensembl/htdocs/img/vep_cache_normal.png non-free/science/ensembl
usr/share/ensembl/public-plugins/ensembl/htdocs/img/vep_cache_normal_thumb.png non-free/science/ensembl
usr/share/ensembl/public-plugins/ensembl/htdocs/img/vep_cache_standalone.png non-free/science/ensembl
usr/share/ensembl/public-plugins/ensembl/htdocs/img/vep_cache_standalone_thumb.png non-free/science/ensembl
.
4698a
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/Web/Object/Metakey.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/Web/Object/Production.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/Web/Object/Species.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/Web/Object/Webdata.pm non-free/science/ensembl
.
4696a
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/Web/Object/AnalysisWebdata.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/Web/Object/Biotype.pm non-free/science/ensembl
.
4693a
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/Web/Factory/Metakey.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/Web/Factory/Production.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/Web/Factory/Species.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/Web/Factory/Webdata.pm non-free/science/ensembl
.
4691a
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/Web/Factory/AnalysisWebdata.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/Web/Factory/Biotype.pm non-free/science/ensembl
.
4688c
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/Web/Configuration/Production.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/Web/Configuration/Species.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/Web/Configuration/Webdata.pm non-free/science/ensembl
.
4686a
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/Web/Configuration/Metakey.pm non-free/science/ensembl
.
4684a
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/ORM/Rose/Object/WebData.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/Web/Configuration/AnalysisWebdata.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/Web/Configuration/Biotype.pm non-free/science/ensembl
.
4681a
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/ORM/Rose/Object/MetaKey.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/ORM/Rose/Object/MetaKeySpecies.pm non-free/science/ensembl
.
4679a
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/ORM/Rose/Object/Biotype.pm non-free/science/ensembl
.
4678a
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/ORM/Rose/Manager/WebData.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/ORM/Rose/Object/AnalysisDescription.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/ORM/Rose/Object/AnalysisWebData.pm non-free/science/ensembl
.
4675a
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/ORM/Rose/Manager/MetaKey.pm non-free/science/ensembl
.
4674a
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/ORM/Rose/Manager/Biotype.pm non-free/science/ensembl
.
4673a
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/ORM/Rose/Manager/AnalysisDescription.pm non-free/science/ensembl
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/ORM/Rose/Manager/AnalysisWebData.pm non-free/science/ensembl
.
4672a
usr/share/ensembl/public-plugins/admin/modules/EnsEMBL/Admin/Component/Production/LogicName.pm non-free/science/ensembl
.
4665,4668d
4413d
4404a
usr/share/ensembl/public-plugins/admin/htdocs/components/87_production.css non-free/science/ensembl
.
4400a
usr/share/ensembl/public-plugins/admin/htdocs/components/00_jquery_livequery.js non-free/science/ensembl
usr/share/ensembl/public-plugins/admin/htdocs/components/00_jquery_tinymce.js non-free/science/ensembl
.
4357,4373d
4351a
usr/share/ensembl/modules/EnsEMBL/Web/ZMenu/Transcript_sf.pm non-free/science/ensembl
.
4307,4308d
4305d
4303a
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Variation/FlankingSequence.pm non-free/science/ensembl
.
4302a
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Transcript/TranscriptSNPTable.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Transcript/TranscriptSeq.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Transcript/TranslationImage.pm non-free/science/ensembl
.
4295,4301c
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/TextDAS.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Transcript/ExonsSpreadsheet.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Transcript/ProteinSeq.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Transcript/ProteinVariations.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Transcript/SNPView.pm non-free/science/ensembl
.
4291,4293c
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Location/ViewBottom.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Location/ViewTop.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Regulation/FeatureDetails.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Regulation/FeatureSummary.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Regulation/FeaturesByCellLine.pm non-free/science/ensembl
.
4287,4289c
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Location/LDImage.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Location/MultiBottom.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Location/MultiTop.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Location/Region.pm non-free/science/ensembl
.
4285c
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Location/Export.pm non-free/science/ensembl
.
4271,4283c
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Gene/FamilyProteins.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Gene/GeneSNPImage.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Gene/GeneSNPTable.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Gene/GeneSeq.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Gene/GeneSpliceImage.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Gene/HomologAlignment.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Gene/RegulationImage.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Gene/SimilarityMatches.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Gene/TranscriptsImage.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/GeneTree/ComparaTree.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/LRG/ExonsSpreadsheet.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/LRG/LRGSNPTable.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/LRG/LRGSeq.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/LRG/ProteinSeq.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/LRG/TranscriptSeq.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/LRG/TranscriptsImage.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Location/ChromosomeImage.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Location/Compara_AlignSliceBottom.pm non-free/science/ensembl
.
4267,4269d
4265a
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Gene/ComparaOrthologs.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Gene/ComparaTree.pm non-free/science/ensembl
.
4263a
usr/share/ensembl/modules/EnsEMBL/Web/ViewConfig/Compara_Alignments.pm non-free/science/ensembl
.
4261a
usr/share/ensembl/modules/EnsEMBL/Web/Tree.pm           non-free/science/ensembl
.
4214,4215d
4210d
4173d
4162,4167d
4156d
4153d
4142d
4139d
4130,4137d
4128a
usr/share/ensembl/modules/EnsEMBL/Web/ImageConfig/gene_sv_view.pm non-free/science/ensembl
.
4117a
usr/share/ensembl/modules/EnsEMBL/Web/ImageConfig/TranscriptSNPView.pm non-free/science/ensembl
.
4116c
usr/share/ensembl/modules/EnsEMBL/Web/ImageConfig/MultiSpecies.pm non-free/science/ensembl
.
4114a
usr/share/ensembl/modules/EnsEMBL/Web/ImageConfig/GeneSNPView.pm non-free/science/ensembl
usr/share/ensembl/modules/EnsEMBL/Web/ImageConfig/GeneSpliceView.pm non-free/science/ensembl
.
4061d
4053,4057d
4023a
usr/share/ensembl/modules/EnsEMBL/Web/Document/Table.pm non-free/science/ensembl
.
3921a
usr/share/ensembl/modules/EnsEMBL/Web/DOM/Node/Element/Tr.pm non-free/science/ensembl
.
3872a
usr/share/ensembl/modules/EnsEMBL/Web/Controller/Ajax.pm non-free/science/ensembl
.
3867d
3843a
usr/share/ensembl/modules/EnsEMBL/Web/Component/Variation/PopulationGraphs.pm non-free/science/ensembl
.
3803d
3795d
3765d
3758a
usr/share/ensembl/modules/EnsEMBL/Web/Component/Portal.pm non-free/science/ensembl
.
3721a
usr/share/ensembl/modules/EnsEMBL/Web/Component/LRG/TranscriptSeq.pm non-free/science/ensembl
.
3720a
usr/share/ensembl/modules/EnsEMBL/Web/Component/LRG/ProteinSeq.pm non-free/science/ensembl
.
3714a
usr/share/ensembl/modules/EnsEMBL/Web/Component/LRG/ExonsSpreadsheet.pm non-free/science/ensembl
.
3654a
usr/share/ensembl/modules/EnsEMBL/Web/Component/Gene/GeneSVTable.pm non-free/science/ensembl
.
3451a
usr/share/ensembl/htdocs/raphael/g.pie-modified-min.js  non-free/science/ensembl
usr/share/ensembl/htdocs/raphael/g.pie-modified.js      non-free/science/ensembl
usr/share/ensembl/htdocs/raphael/g.raphael-min.js       non-free/science/ensembl
usr/share/ensembl/htdocs/raphael/raphael-min.js         non-free/science/ensembl
.
3436d
3433a
usr/share/ensembl/htdocs/info/website/upload/generic.html non-free/science/ensembl
.
3414,3416c
usr/share/ensembl/htdocs/info/website/news.html         non-free/science/ensembl
.
3376a
usr/share/ensembl/htdocs/info/docs/webcode/changelog/60.html non-free/science/ensembl
usr/share/ensembl/htdocs/info/docs/webcode/changelog/61.html non-free/science/ensembl
usr/share/ensembl/htdocs/info/docs/webcode/changelog/62.html non-free/science/ensembl
usr/share/ensembl/htdocs/info/docs/webcode/changelog/63.html non-free/science/ensembl
usr/share/ensembl/htdocs/info/docs/webcode/changelog/index.html non-free/science/ensembl
.
3353a
usr/share/ensembl/htdocs/info/docs/api/funcgen/regulation_tutorial.html non-free/science/ensembl
.
3347a
usr/share/ensembl/htdocs/info/docs/api/core/xrefs.mwb   non-free/science/ensembl
usr/share/ensembl/htdocs/info/docs/api/core/xrefs_core.pdf non-free/science/ensembl
.
3340,3342c
usr/share/ensembl/htdocs/info/docs/api/core/fundamental_tables.mwb non-free/science/ensembl
.
3336,3337d
3326a
usr/share/ensembl/htdocs/info/docs/Doxygen/index.html   non-free/science/ensembl
.
3268d
3264a
usr/share/ensembl/htdocs/img/help/pie_graphs.png        non-free/science/ensembl
usr/share/ensembl/htdocs/img/help/refseq_models.png     non-free/science/ensembl
usr/share/ensembl/htdocs/img/help/region_in_detail.png  non-free/science/ensembl
.
3175a
usr/share/ensembl/htdocs/i/strand-f.png                 non-free/science/ensembl
usr/share/ensembl/htdocs/i/strand-r.png                 non-free/science/ensembl
usr/share/ensembl/htdocs/i/strand.png                   non-free/science/ensembl
.
3169a
usr/share/ensembl/htdocs/i/star-on.png                  non-free/science/ensembl
.
3165a
usr/share/ensembl/htdocs/i/sort.png                     non-free/science/ensembl
.
3094a
usr/share/ensembl/htdocs/i/mirrors/ensembl-asia.png     non-free/science/ensembl
usr/share/ensembl/htdocs/i/mirrors/ensembl-useast.png   non-free/science/ensembl
.
3091a
usr/share/ensembl/htdocs/i/link.png                     non-free/science/ensembl
.
3071a
usr/share/ensembl/htdocs/i/export_csv.png               non-free/science/ensembl
.
3047a
usr/share/ensembl/htdocs/i/code.gif                     non-free/science/ensembl
.
3045a
usr/share/ensembl/htdocs/i/close2.gif                   non-free/science/ensembl
.
3019a
usr/share/ensembl/htdocs/components/45_popups.css       non-free/science/ensembl
.
3017a
usr/share/ensembl/htdocs/components/25_FuncgenMatrix.js non-free/science/ensembl
.
3013d
3002a
usr/share/ensembl/htdocs/components/10_PopulationGraph.js non-free/science/ensembl
.
2995a
usr/share/ensembl/htdocs/components/10_AssemblyMappings.js non-free/science/ensembl
.
2973a
usr/share/ensembl/ensembl/sql/update_indexes.sql        non-free/perl/libensembl-core-perl
.
2971a
usr/share/ensembl/ensembl/sql/rnaseq_update_version.sql non-free/perl/libensembl-core-perl
.
2970a
usr/share/ensembl/ensembl/sql/patch_62_63_a.sql         non-free/perl/libensembl-core-perl
usr/share/ensembl/ensembl/sql/patch_62_63_b.sql         non-free/perl/libensembl-core-perl
usr/share/ensembl/ensembl/sql/patch_62_63_c.sql         non-free/perl/libensembl-core-perl
.
2835a
usr/share/ensembl/ensembl/sql/link_xrefs_to_genes.sql   non-free/perl/libensembl-core-perl
.
2834a
usr/share/ensembl/ensembl/sql/delete_duplicates.sql     non-free/perl/libensembl-core-perl
.
2500,2501d
2353d
2326a
usr/share/ensembl/ensembl/misc-scripts/xref_mapping/XrefParser/PHIbaseParser.pm non-free/perl/libensembl-core-perl
.
2323d
2307d
2281a
usr/share/ensembl/ensembl/misc-scripts/xref_mapping/XrefMapper/ustilago_maydis.pm non-free/perl/libensembl-core-perl
.
2277a
usr/share/ensembl/ensembl/misc-scripts/xref_mapping/XrefMapper/puccinia_triticina.pm non-free/perl/libensembl-core-perl
.
2275a
usr/share/ensembl/ensembl/misc-scripts/xref_mapping/XrefMapper/nectria_haematococca.pm non-free/perl/libensembl-core-perl
.
2153a
usr/share/ensembl/ensembl/misc-scripts/production_database/scripts/populate_production_db_tables_v2.pl non-free/perl/libensembl-core-perl
usr/share/ensembl/ensembl/misc-scripts/production_database/scripts/populate_production_db_tables_v3.pl non-free/perl/libensembl-core-perl
.
2133a
usr/share/ensembl/ensembl/misc-scripts/link_out/generate_LinkOut.pl non-free/perl/libensembl-core-perl
usr/share/ensembl/ensembl/misc-scripts/link_out/linkOut_config.txt non-free/perl/libensembl-core-perl
.
2086a
usr/share/ensembl/ensembl/misc-scripts/db/kill_process_by_db.pl non-free/perl/libensembl-core-perl
.
2023a
usr/share/ensembl/ensembl/misc-scripts/alternative_splicing/generateSplicingEventTable.pl non-free/perl/libensembl-core-perl
.
1954a
usr/share/ensembl/ensembl-variation/sql/patch_62_63_a.sql non-free/perl/libensembl-variation-perl
usr/share/ensembl/ensembl-variation/sql/patch_62_63_b.sql non-free/perl/libensembl-variation-perl
usr/share/ensembl/ensembl-variation/sql/patch_62_63_c.sql non-free/perl/libensembl-variation-perl
usr/share/ensembl/ensembl-variation/sql/patch_62_63_d.sql non-free/perl/libensembl-variation-perl
usr/share/ensembl/ensembl-variation/sql/patch_62_63_e.sql non-free/perl/libensembl-variation-perl
.
1868a
usr/share/ensembl/ensembl-variation/scripts/misc/generate_variation_set_table.pl non-free/perl/libensembl-variation-perl
usr/share/ensembl/ensembl-variation/scripts/misc/patch_transcript_variation.pl non-free/perl/libensembl-variation-perl
usr/share/ensembl/ensembl-variation/scripts/misc/patch_var_class.pl non-free/perl/libensembl-variation-perl
usr/share/ensembl/ensembl-variation/scripts/misc/sources2html.pl non-free/perl/libensembl-variation-perl
.
1865a
usr/share/ensembl/ensembl-variation/scripts/misc/add_attrib_entries.pl non-free/perl/libensembl-variation-perl
.
1834a
usr/share/ensembl/ensembl-variation/scripts/import/make_subsnp_table.pl non-free/perl/libensembl-variation-perl
usr/share/ensembl/ensembl-variation/scripts/import/map_hgmd_coord.pl non-free/perl/libensembl-variation-perl
.
1827a
usr/share/ensembl/ensembl-variation/scripts/import/import_variant_submissions.pl non-free/perl/libensembl-variation-perl
.
1801c
usr/share/ensembl/ensembl-variation/scripts/import/create_testdb.pl non-free/perl/libensembl-variation-perl
.
1775a
usr/share/ensembl/ensembl-variation/scripts/import/LRG/Mapper.pm non-free/perl/libensembl-variation-perl
usr/share/ensembl/ensembl-variation/scripts/import/LRG/SMALT.pm non-free/perl/libensembl-variation-perl
usr/share/ensembl/ensembl-variation/scripts/import/LRG/Samtools.pm non-free/perl/libensembl-variation-perl
usr/share/ensembl/ensembl-variation/scripts/import/LRG/bsub.pm non-free/perl/libensembl-variation-perl
.
1769a
usr/share/ensembl/ensembl-variation/scripts/import/LRG/Executable.pm non-free/perl/libensembl-variation-perl
usr/share/ensembl/ensembl-variation/scripts/import/LRG/Exonerate.pm non-free/perl/libensembl-variation-perl
.
1500a
usr/share/ensembl/ensembl-variation/modules/Bio/EnsEMBL/Variation/Pipeline/ProteinFunction/InitJobs.pm non-free/perl/libensembl-variation-perl
usr/share/ensembl/ensembl-variation/modules/Bio/EnsEMBL/Variation/Pipeline/ProteinFunction/ProteinFunction_conf.pm non-free/perl/libensembl-variation-perl
usr/share/ensembl/ensembl-variation/modules/Bio/EnsEMBL/Variation/Pipeline/ProteinFunction/RunPolyPhen.pm non-free/perl/libensembl-variation-perl
usr/share/ensembl/ensembl-variation/modules/Bio/EnsEMBL/Variation/Pipeline/ProteinFunction/RunSift.pm non-free/perl/libensembl-variation-perl
usr/share/ensembl/ensembl-variation/modules/Bio/EnsEMBL/Variation/Pipeline/ProteinFunction/RunWeka.pm non-free/perl/libensembl-variation-perl
.
1497a
usr/share/ensembl/ensembl-variation/modules/Bio/EnsEMBL/Variation/Pipeline/BaseVariationProcess.pm non-free/perl/libensembl-variation-perl
.
1451a
usr/share/ensembl/ensembl-functgenomics/sql/patch_62_63_a.sql non-free/perl/libensembl-functgenomics-perl
usr/share/ensembl/ensembl-functgenomics/sql/patch_62_63_b.sql non-free/perl/libensembl-functgenomics-perl
usr/share/ensembl/ensembl-functgenomics/sql/patch_62_63_c.sql non-free/perl/libensembl-functgenomics-perl
.
1351a
usr/share/ensembl/ensembl-functgenomics/scripts/run_dump_features.sh non-free/perl/libensembl-functgenomics-perl
.
1262,1271c
usr/share/ensembl/ensembl-functgenomics/scripts/export/dump_features.pl non-free/perl/libensembl-functgenomics-perl
.
1260a
usr/share/ensembl/ensembl-functgenomics/scripts/examples/regulatory_regions_example.pl non-free/perl/libensembl-functgenomics-perl
.
1259a
usr/share/ensembl/ensembl-functgenomics/scripts/examples/motif_features_example.pl non-free/perl/libensembl-functgenomics-perl
.
1258a
usr/share/ensembl/ensembl-functgenomics/scripts/examples/external_features_example.pl non-free/perl/libensembl-functgenomics-perl
usr/share/ensembl/ensembl-functgenomics/scripts/examples/feature_sets_example.pl non-free/perl/libensembl-functgenomics-perl
usr/share/ensembl/ensembl-functgenomics/scripts/examples/feature_types_example.pl non-free/perl/libensembl-functgenomics-perl
.
1255a
usr/share/ensembl/ensembl-functgenomics/scripts/examples/annotated_features_example.pl non-free/perl/libensembl-functgenomics-perl
.
811d
808d
783a
usr/share/ensembl/ensembl-compara/sql/patch_62_63.sql   non-free/perl/libensembl-compara-perl
.
733a
usr/share/ensembl/ensembl-compara/scripts/taxonomy/web_name_patches.sql non-free/perl/libensembl-compara-perl
.
702d
696d
693,694d
688a
usr/share/ensembl/ensembl-compara/scripts/pipeline/dump_genomes2fasta.pl non-free/perl/libensembl-compara-perl
.
675d
671d
632a
usr/share/ensembl/ensembl-compara/scripts/homology/extractAllOrthologues.pl non-free/perl/libensembl-compara-perl
.
440c
usr/share/ensembl/ensembl-compara/modules/Bio/EnsEMBL/Compara/RunnableDB/PairAlignerConfig.pm non-free/perl/libensembl-compara-perl
.
436a
usr/share/ensembl/ensembl-compara/modules/Bio/EnsEMBL/Compara/RunnableDB/MercatorPecan/BlastAndParsePAF.pm non-free/perl/libensembl-compara-perl
usr/share/ensembl/ensembl-compara/modules/Bio/EnsEMBL/Compara/RunnableDB/MercatorPecan/BlastFactory.pm non-free/perl/libensembl-compara-perl
usr/share/ensembl/ensembl-compara/modules/Bio/EnsEMBL/Compara/RunnableDB/MercatorPecan/CheckReuseDB.pm non-free/perl/libensembl-compara-perl
usr/share/ensembl/ensembl-compara/modules/Bio/EnsEMBL/Compara/RunnableDB/MercatorPecan/DumpMercatorFiles.pm non-free/perl/libensembl-compara-perl
usr/share/ensembl/ensembl-compara/modules/Bio/EnsEMBL/Compara/RunnableDB/MercatorPecan/DumpSubsetIntoFasta.pm non-free/perl/libensembl-compara-perl
usr/share/ensembl/ensembl-compara/modules/Bio/EnsEMBL/Compara/RunnableDB/MercatorPecan/Mercator.pm non-free/perl/libensembl-compara-perl
usr/share/ensembl/ensembl-compara/modules/Bio/EnsEMBL/Compara/RunnableDB/MercatorPecan/MercatorFileFactory.pm non-free/perl/libensembl-compara-perl
usr/share/ensembl/ensembl-compara/modules/Bio/EnsEMBL/Compara/RunnableDB/MercatorPecan/Pecan.pm non-free/perl/libensembl-compara-perl
.
422a
usr/share/ensembl/ensembl-compara/modules/Bio/EnsEMBL/Compara/RunnableDB/GenomicAlignBlock/Gerp.pm non-free/perl/libensembl-compara-perl
.
406d
389d
329a
usr/share/ensembl/ensembl-compara/modules/Bio/EnsEMBL/Compara/Production/EPOanchors/SetGenomeDBLocator.pm non-free/perl/libensembl-compara-perl
.
326a
usr/share/ensembl/ensembl-compara/modules/Bio/EnsEMBL/Compara/Production/EPOanchors/FindPairwiseOverlaps.pm non-free/perl/libensembl-compara-perl
.
324a
usr/share/ensembl/ensembl-compara/modules/Bio/EnsEMBL/Compara/Production/EPOanchors/ChunkRefDnafrags.pm non-free/perl/libensembl-compara-perl
.
310a
usr/share/ensembl/ensembl-compara/modules/Bio/EnsEMBL/Compara/PipeConfig/ProteinTreesFromFASTA_conf.pm non-free/perl/libensembl-compara-perl
.
307a
usr/share/ensembl/ensembl-compara/modules/Bio/EnsEMBL/Compara/PipeConfig/MercatorPecan_conf.pm non-free/perl/libensembl-compara-perl
.
305a
usr/share/ensembl/ensembl-compara/modules/Bio/EnsEMBL/Compara/PipeConfig/GenerateAnchors_conf.pm non-free/perl/libensembl-compara-perl
usr/share/ensembl/ensembl-compara/modules/Bio/EnsEMBL/Compara/PipeConfig/ImportNCBItaxonomy_conf.pm non-free/perl/libensembl-compara-perl
.
