25a
Package: ensembl-doc
Priority: extra
Section: non-free/doc
Installed-Size: 860
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: all
Source: ensembl
Version: 57-7
Filename: pool/non-free/e/ensembl/ensembl-doc_57-7_all.deb
Size: 525644
MD5sum: 605e723ae938d34f9f04e307b5ba62cb
SHA1: d0d3d5d701f4ec23167b2c3f251da07e395791c8
SHA256: 8fef92f293f00b2f3a3bf1c35efc63b5d59e7c8ff44685fad7f9ef16eb7c7641
Description: tutorials and othe documentation for Ensembl
 Several Perl packages of Ensmebl offer a description of their API.
 The compara package offers a tutorial. Also the Ensembl schema
 is distributed with this documentation package.
Homepage: http://www.ensembl.org

Package: ensembl
Priority: extra
Section: non-free/science
Installed-Size: 27900
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: all
Version: 57-7
Depends: debconf (>= 0.5) | debconf-2.0, apache2-mpm-prefork, csh, expat, perl, libcgi-pm-perl, libcgi-session-perl, libdb-file-lock-perl, libdbd-mysql, perl-modules, ensembl-bin, libensembl-core-perl, libensembl-functgenomics-perl, libensembl-compara-perl, libensembl-external-perl, libensembl-variation-perl, tcsh, liblwp-parallel-perl, mysql-server, mysql-client
Pre-Depends: debconf
Recommends: ttf-mscorefonts-installer, acedb-other-dotter, libcgi-ajax-perl, libcache-memcached-perl, libclass-dbi-sweet-perl, libclass-std-perl, libclass-std-utils-perl, libcompress-bzip2-perl, libfile-spec-perl, libdata-uuid-libuuid-perl, libgd-text-perl, libhash-merge-perl, libhtml-parser-perl, liblist-moreutils-perl, liblog-log4perl-perl, libmailtools-perl, libwww-curl-perl, libapache2-mod-perl2, libnumber-format-perl, libgd-gd2-noxpm-perl, libpdf-api2-perl, libsys-hostname-long-perl, libtemplate-plugin-number-format-perl, libxml-dom-perl, libxml-rss-perl, libxml-simple-perl, libbsd-resource-perl, libxml-xpath-perl, libxml-atom-perl, libjson-perl, libclass-data-inheritable-perl, libconfig-inifiles-perl, libdevel-stacktrace-perl, libexception-class-perl, libhtml-template-perl, libimage-size-perl, libio-string-perl, libipc-run-perl, libxml-libxml-perl, libole-storage-lite-perl, libparse-recdescent-perl, libspreadsheet-writeexcel-perl, libmime-types-perl, libmath-bezier-perl, librtf-writer-perl, libbio-das-lite-perl, bioperl1.2.3 | bioperl
Suggests: ksh | mksh | pdksh | zsh
Filename: pool/non-free/e/ensembl/ensembl_57-7_all.deb
Size: 9026032
MD5sum: dcdd781843ae12f7f8734b68e56cf67b
SHA1: 6fb1275f1b94cbcaca16fa3201bad4a08694148a
SHA256: 07f4e359102b0a8c1f75f19dfd2a7948ca3abca7468f9e5321fadba104caeb62
Description: Installs a basic Ensembl 57 genome browser.
 Ensembl is a joint project of the Sanger Center and the European
 Bioinformatics Institute, an outstation of the European Molecular
 Biology Laboratory, (EMBL-EBI) that are sharing a campus in Hinxton
 near Cambridge, UK. It presents the sequence data for the
 yet available complete genomes of many vertebrates and is helped
 by many sister-projects to cover also plants, invertebrates
 and bacteria.
 .
 This package provides a basic installation of Ensembl. It comprises
 a full copy of the public Ensembl website, minus Blast and SSAHA,
 and minus BioMart. It uses UniSearch instead of the engine used on the
 public site for searching by keyword. It connects directly to the public
 databases hosted by the EBI/Sanger.
 .
 This is meant as an easy way to get a basic Ensembl installation
 working on Debian. It can then be customised to local requirements.
 .
 Note that Ensembl has two odd dependencies: bioperl1.2.3 and
 libparallel-useragent-perl. Those are not required for routine
 browsing, but the bioperl1.2.3 library performs the parsing of BLAST
 outputs. Version 1.2.3 is in conflict with any other existing bioperl
 installation and force you to effectively downgrade.
 .
 libwww-perl5.808  will conflict with the latest libwww-perl installation
 and thus force a downgrade to 5.808, which will disable many other tools
 on your system. Therefore it is advisable NOT to install this package
 in parallel with any other software, and/or use a virtual machine or
 dedicated machine.
 .
 We will work to try and remove these dependencies and allow Ensembl
 to run fully on an up-do-date machine.
 .
 WARNING: Requires internet connection both to install and to run, as it
 connects to the Sanger/EBI database servers during both installation
 and at runtime.
Homepage: http://www.ensembl.org

Package: libensembl-compara-perl
Priority: extra
Section: non-free/perl
Installed-Size: 13796
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: all
Source: ensembl
Version: 57-7
Depends: libensembl-core-perl
Filename: pool/non-free/e/ensembl/libensembl-compara-perl_57-7_all.deb
Size: 4946140
MD5sum: 9115565e6ed92afee3126edf77118f1a
SHA1: ace8e62d1fda53b4a567a058bd0baab781fefb2f
SHA256: edf10db44836114eab7d9080e1987a6791edd38e886cfac9ff3c126459f2ee88
Description: API for comparative genomics with Ensembl
 The Ensembl project presents the sequence data for the yet
 available complete genomes of many vertebrates and is helped by many
 sister-projects to cover also plants, invertebrates and bacteria.
 .
 Any creationist please ignore this package, it will not make any sense
 to you. The others will see how genes known in the human can be traced
 back down to the fly (and some developmental genes have for instance
 even been proven to be functional in the fly), or that many genes have
 kept their chromosomal vicinity over millions of years and yet some
 nucleotides as a block remain unchanged while many other neighbouring
 positions have undergone many changes .... maybe those that have not
 changed mean something?
Homepage: http://www.ensembl.org

Package: libensembl-core-perl
Priority: extra
Section: non-free/perl
Installed-Size: 13000
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: all
Source: ensembl
Version: 57-7
Depends: bioperl1.2.3 | bioperl
Suggests: ksh | mksh | pdksh | zsh, tk
Filename: pool/non-free/e/ensembl/libensembl-core-perl_57-7_all.deb
Size: 2354734
MD5sum: 5fe17e1559bf90b421cbba212c0cabbf
SHA1: 9a7c9fbac1ca4f8bd96437dc94c25e68da89d3e4
SHA256: 0b08aca65d0929c9752bbe589b62667a967d6ceeb7cb2d4480240cb03dd1b9c6
Description: core libraries of Ensembl API
 The Ensembl project presents the sequence data for the yet
 available complete genomes of many vertebrates and is helped by many
 sister-projects to cover also plants, invertebrates and bacteria.
 .
 This package provides the core of its API, defining basic concepts
 like biological sequences and that there may be databases from
 which information can be retrieved. If you work with the Ensembl
 API, then you need this package.
 .
 For complete confidence in the functionality of your Ensembl
 installation, version 1.2.3 of BioPerl should be used. There are
 reports that a current version would also be functional, but
 upstream thinks differently here.
Homepage: http://www.ensembl.org

Package: libensembl-draw-perl
Priority: extra
Section: non-free/perl
Installed-Size: 1348
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: all
Source: ensembl
Version: 57-7
Depends: libensembl-core-perl
Filename: pool/non-free/e/ensembl/libensembl-draw-perl_57-7_all.deb
Size: 216786
MD5sum: 4af6dd26ea0b794a86ccb24ac85ddc30
SHA1: 517fb92c036bb94d4eb201e6c46c0422b47dbb71
SHA256: aee1133a61e1d4191b5e4e4e1f24ceaed737054315062beb8439a2ccc479685f
Description: Ensembl API for graphical representation of genomic properties
 The Ensembl project presents the sequence data for the yet
 available complete genomes of many vertebrates and is helped by many
 sister-projects to cover also plants, invertebrates and bacteria.
 .
 This package provides a series of routines to help the web server present
 items graphically.
Homepage: http://www.ensembl.org

Package: libensembl-external-perl
Priority: extra
Section: non-free/perl
Installed-Size: 1404
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: all
Source: ensembl
Version: 57-7
Depends: libensembl-core-perl
Filename: pool/non-free/e/ensembl/libensembl-external-perl_57-7_all.deb
Size: 201588
MD5sum: 360d33a9625cbb2eef020795637f33dd
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SHA256: 592dbd48906d96cb1e9e55db6ac0e8e7c9d3d8bc2b048ed31170d0be59b56316
Description: API for integration of external data sources with Ensembl
 The Ensembl project presents the sequence data for the yet
 available complete genomes of many vertebrates and is helped by many
 sister-projects to cover also plants, invertebrates and bacteria.
 .
 In a way, this package is the one that is most important for Debian,
 since the integration of previous local data is (besides educational
 purposes) probably the main motivation for the installation of these
 pacakges.
Homepage: http://www.ensembl.org

Package: libensembl-functgenomics-perl
Priority: extra
Section: non-free/perl
Installed-Size: 3452
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: all
Source: ensembl
Version: 57-7
Depends: libensembl-core-perl
Filename: pool/non-free/e/ensembl/libensembl-functgenomics-perl_57-7_all.deb
Size: 728348
MD5sum: 23ea5a7762aedddd614fd567fcac523d
SHA1: 538affac9f338e6005476eb019cb64c27c21517a
SHA256: 8d73c8836fbfff956d08025ecf11f6ee1ef096a41cfbf7f55b7a731fbfd0ea65
Description: API for functional genomics with Ensembl
 The Ensembl project presents the sequence data for the yet
 available complete genomes of many vertebrates and is helped by many
 sister-projects to cover also plants, invertebrates and bacteria.
 .
 Functional genomics is about the investigation of what effects certain
 parts of the genome have across tissues, states of those tissues (like
 hypoxia, temperature changes, growth, ...) and of course in diseases.
Homepage: http://www.ensembl.org

Package: libensembl-variation-perl
Priority: extra
Section: non-free/perl
Installed-Size: 10316
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Architecture: all
Source: ensembl
Version: 57-7
Depends: libensembl-core-perl
Filename: pool/non-free/e/ensembl/libensembl-variation-perl_57-7_all.deb
Size: 3193024
MD5sum: a7860d1fed865239a6967daa3d8e93c3
SHA1: 4c0ecbb30a804882b14ddd68fd84ee41168449ac
SHA256: f2ea4a44aa9920a770d52b460b17b984ea77123f8b24f0ba30ec9433a2f73179
Description: Ensembl API for investigation of inter-individual genomic differences
 The Ensembl project presents the sequence data for the yet
 available complete genomes of many vertebrates and is helped by many
 sister-projects to cover also plants, invertebrates and bacteria.
 .
 We humans don't have all the same DNA. We have come to accept that
 as part of the problem in organ transplantation. Key of genetic research
 is to link variants in the DNA with phenotypes. Of those, insights
 in the molecular pathophysiology are preferred results since those
 are likely to help a better understanding of current treatments
 and may generate ideas for novel drugs at best.
Homepage: http://www.ensembl.org

.
